How Hierarchical Clustering Differs from K-Means
- IOTA ACADEMY
- Apr 8
- 4 min read
A crucial method for grouping related data points together in machine learning and data analysis is clustering. Of the different clustering algorithms, K-Means and Hierarchical Clustering are two of the most widely used methods. Although the goal of both approaches is to divide data into meaningful categories, their methodologies, scalability, and use cases are very different.
This blog examines the differences between K-Means and Hierarchical Clustering, as well as the benefits and drawbacks of each technique and when to apply it.

Hierarchical Clustering
Every data point begins as a separate cluster in the tree-like method of hierarchical clustering. The algorithm then creates a hierarchy by gradually combining the nearest clusters according to how similar they are. Until a predetermined number of clusters is reached or all data points are sorted into a single cluster, this procedure keeps going. A dendrogram, which illustrates the formation of clusters at various levels, is the end result. By cutting the dendrogram at a particular level, this structure gives the user freedom in selecting the number of clusters.
Agglomerative and Divisive hierarchical clustering are the two primary varieties. Divisive clustering starts with a single large cluster and divides it into smaller clusters, whereas agglomerative clustering starts with individual data points and gradually combines them. Hierarchical clustering has the benefit of not requiring the number of clusters to be predetermined, which makes it helpful for exploratory data analysis. However, because it necessitates calculating the distances between every data point at every stage, it is typically computationally costly, particularly for large datasets.
Advantages of Hierarchical Clustering
No need to specify the number of clusters in advance: There is no need to predetermine the number of clusters; the dendrogram can be utilized to find the ideal number.
Works well with small datasets: Effective when working with a modest number of data points; works well with tiny datasets.
Offers a hierarchy: This is helpful when it's necessary to examine relationships between data pieces on several levels.
Disadvantages of Hierarchical Clustering
Computationally expensive: Requires more memory and processing time as it calculates distances between all points, making it inefficient for large datasets.
Not suitable for very large datasets: Performance decreases significantly as the number of data points grows.
Sensitive to noise and outliers: Outliers can impact the clustering process and alter the dendrogram structure.
K-Means Clustering
K-Means In contrast, clustering employs a splitting strategy. The algorithm sends each data point to the closest cluster centroid after first choosing K, the predetermined number of clusters. Data points are then redistributed in accordance with these iteratively updated centroids, which are based on the mean position of every point inside a cluster. Until the centroids stabilize—that is, stop changing substantially between iterations—this process is repeated.
K-Means is renowned for its effectiveness since it clusters data rapidly. Its requirement that the user predetermine K, the number of clusters, may be a drawback if the ideal number of clusters is unclear. Furthermore, K-Means is less useful for datasets with irregular or variable cluster forms because it presupposes that clusters are spherical and of comparable sizes. Additionally, the technique is sensitive to the initialization of centroids, which can result in varying clustering outcomes.
Advantages of K-Means Clustering
Quick and effective: Great for big datasets because it's less expensive to compute than hierarchical clustering.
Scalable: Able to manage massive datasets with millions or thousands of data points.
Effective when clusters are well-separated: K-Means performs effectively when clusters are spherical in shape.
Disadvantages of K-Means Clustering
Needs K to be specified beforehand: It can be difficult to determine the ideal value of K if the correct number of clusters is unknown.
Sensitive to centroids' original positions: Inadequate initialization may result in less-than-ideal clusters.
Assumes that clusters are spherical: it has trouble with complex or irregularly shaped clusters.
Key Differences Between Hierarchical Clustering and K-Means
Feature | Hierarchical Clustering | K-Means Clustering |
Cluster Formation | Iteratively merges or splits clusters | Assigns data points to the nearest centroid |
Number of Clusters | No need to specify beforehand | Must specify K in advance |
Computational Complexity | High (O(n²) or O(n³)) – slow for large datasets | Lower (O(n)) – fast for large datasets |
Dataset Size Suitability | Suitable for small to medium-sized datasets | Suitable for large datasets |
Handling of Outliers | Sensitive to noise and outliers | More robust against outliers |
Flexibility | Works well with hierarchical structures | Best for spherical clusters |
Output Representation | Dendrogram (tree-like structure) | Cluster assignments with centroids |
Interpretability | Provides a visual hierarchy of clusters | Provides distinct cluster assignments |
When to Use Hierarchical Clustering vs. K-Means
The size of the dataset, computing limitations, and cluster characteristics all influence the decision between K-Means and Hierarchical Clustering.
The best use cases for hierarchical clustering are small to medium-sized datasets, which usually have a few thousand data points. It is helpful for exploratory data analysis, where the ideal number of clusters is uncertain, because it does not require predetermined cluster numbers. Additionally, it works better when examining data that has hierarchical or layered linkages, like in social network research, biological classifications, and studies of consumer behavior. However, because of its high memory and time requirements, Hierarchical Clustering is not feasible for huge datasets.
Because it is computationally efficient and can easily accommodate thousands or millions of data points, K-Means is the recommended option for huge datasets. It functions best when the number of clusters is known ahead of time and when spherical, well-separated clusters are anticipated to develop from the data. K-Means is frequently employed in applications where scalability and performance are essential, like document clustering, recommendation systems, and customer segmentation. However, figuring out the ideal number of clusters might be difficult because K must be specified beforehand.
Conclusion
Although K-Means Clustering and Hierarchical Clustering are both effective methods for categorizing data, their applicability varies depending on the size of the dataset, the requirement for hierarchical linkages, and computing efficiency. Although it offers an organized and comprehensible method, hierarchical clustering is computationally costly for big datasets. Large data quantities can be handled with K-Means because it is scalable and speedier, but it requires that the number of clusters be predetermined. Choosing the best clustering technique for a particular data analysis assignment requires an understanding of these distinctions.
Knowing the distinctions between K-Means and Hierarchical Clustering might assist you in selecting the best technique for your data analysis requirements. Enroll in our Data Science & Machine Learning Course to become proficient in these methods and improve your data science abilities!
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